bcbio
by bcbio package collection (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| arvados-python-client | 0.1.20150616221703 | Python API for Arvados, an open source platform for managing and analyzing biomedical big data | Mar 25, 2025 | Apache License 2.0 |
| awscli | 1.7.14 | — | Mar 25, 2025 | Apache License 2.0 |
| azure-sdk-for-python | v0.11.1 | This project provides a set of Python packages that make it easy to access the Microsoft Azure components such as ServiceManagement, Storage, and ServiceBus. | Mar 25, 2025 | Apache License 2.0 |
| bcbio-nextgen | 0.9.5 | Validated, scalable, community developed variant calling and RNA-seq analysis | Mar 25, 2025 | MIT |
| bcbio-nextgen-vm | 0.1.0a | Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines | Mar 25, 2025 | MIT |
| bcdoc | 0.13.0 | — | Mar 25, 2025 | Apache License 2.0 |
| botocore | 0.95.0 | — | Mar 25, 2025 | Apache License 2.0 |
| bx-python | 0.7.3 | Toolkit to enable rapid implementation of genome scale analyses. | Mar 25, 2025 | MIT |
| ciso8601 | 1.0.1 | Fast ISO8601 date time parser for Python written in C | Mar 25, 2025 | MIT |
| cnvkit | 0.7.3dev0 | Copy number variant detection from targeted DNA sequencing | Mar 25, 2025 | MIT |
| cpat | 1.2.2 | Coding Potential Assessment Tool | Mar 25, 2025 | GNU |
| crossmap | 0.1.8 | Convenient conversion of genome coordinates between different assemblies | Mar 25, 2025 | GPLv3 |
| elasticluster | 0.1.3bcbio | Create, manage and setup computing clusters hosted on a public or private cloud infrastructure. | Mar 25, 2025 | GPL |
| ete2 | 2.2.1072 | Phylogenetic tree analyses and exploration | Mar 25, 2025 | GPLv3 |
| gffutils | 0.8.4rc1 | GFF and GTF file manipulation and interconversion | Mar 25, 2025 | MIT |
| google-api-python-client | 1.3.2 | — | Mar 25, 2025 | Apache 2.0 |
| hap.py | 0.2.1 | — | Mar 25, 2025 | BSD |
| hmmlearn | 20150818 | Hidden Markov Models in Python, with scikit-learn like API | Mar 25, 2025 | BSD |
| htseq | 0.6.1 | A framework to process and analyze data from high-throughput sequencing (HTS) assays | Mar 25, 2025 | GPLv3 |
| ipython-cluster-helper | 0.5.0 | Tool to easily start up an IPython cluster on different schedulers | Mar 25, 2025 | MIT |
| jmespath | 0.6.1 | — | Mar 25, 2025 | MIT |
| metasv | 0.4.0 | An accurate and integrative structural-variant caller for next generation sequencing | Mar 25, 2025 | MIT |
| netifaces | 0.10.4 | — | Mar 25, 2025 | MIT |
| oauth2client | 1.4.6 | — | Mar 25, 2025 | Apache 2.0 |
| phylowgs | 20150714 | Application for inferring subclonal composition and evolution from whole-genome sequencing data | Mar 25, 2025 | GPLv3 |