ecolityper
Comprehensive E. coli Typing Pipeline: MLST, Serotyping, CH Typing, Phylogrouping, AMR, and Virulence Analysis
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Description
EcoliTyper is a comprehensive bioinformatics pipeline for complete Escherichia coli genomic characterization. It integrates multiple typing schemes including MLST, serotyping (O and H antigens), CH typing (FumC and FimH), ezClermont phylogrouping, antibiotic resistance gene detection (AMRfinderPlus), and virulence/plasmid screening (ABRicate).
About
Summary
Comprehensive E. coli Typing Pipeline: MLST, Serotyping, CH Typing, Phylogrouping, AMR, and Virulence Analysis
Last Updated
May 15, 2026 at 16:37
License
MIT
Supported Platforms
noarch
GitHub Repository
https://github.com/bbeckley-hub/EcoliTyperDocumentation
https://github.com/bbeckley-hub/EcoliTyper