RNA-seq is a method that uses next-generation sequencing to quantify and analyze RNA. It can be used for finding significantly differentially expressed genes (DEGs) in well sequenced organisms. This package is a complete function library for analyzing read files, trimming of raw reads, mapping on reference genomes, counting reads per gene and finding significant DEGs.
Due to many conda channels being removed, the entire project has now been integrated into
DOCKER
https://hub.docker.com/repository/docker/xentrics/geo2rnaseq
and SINGULARITY
https://singularity-hub.org/collections/4387
