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r-metagmisc

Community

Miscellaneous functions for metagenomic analysis

Installation

To install this package, run one of the following:

Conda
$conda install cgr-lab::r-metagmisc

Usage Tracking

0.6.0.9000
0.5.0
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

This package contains miscellaneous functions for metagenomic analysis, including data transformations, several parsers (for USEARCH UC-format; BLAST, SINA and STAMPA outputs, etc.), taxonomy handlers (SILVA, QIIME, AMPTk), phyloseq-shortcuts (multiple rarefaction, phyloseq splitting and exporting), and DADA2-shortcuts (error rate estimation on the subset of data, export of denoised amplicons in fasta).

About

Summary

Miscellaneous functions for metagenomic analysis

Last Updated

Aug 29, 2025 at 10:16

License

MIT

Total Downloads

4

Supported Platforms

linux-64