AgBiome
by AgBiome (Organization)
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To install packages from this channel, use the channel temporarily with conda or add it to your .condarc file for configured ongoing access. Learn more
- Temporary
- Configured
Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| bbtools | 37.62 | BBMap short read aligner, and other bioinformatic tools. | Mar 25, 2025 | — |
| bioawk | NA | BWK awk modified for biological data | Mar 25, 2025 | — |
| canu | 1.5 | A single molecule sequence assembler for genomes large and small. | Mar 25, 2025 | — |
| cdhit | 4.6.1 | CD-HIT is a program for clustering DNA/protein sequence database at high identity with tolerance. | Mar 25, 2025 | GPL2 |
| dataset | 0.8.0 | Toolkit for Python-based data processing. | Mar 25, 2025 | MIT License |
| disco | 1.1 | Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler | Mar 25, 2025 | GPL3 |
| kaiju | 1.5.0 | — | Mar 25, 2025 | — |
| makefile2graph | 1.5.0 | — | Mar 25, 2025 | — |
| mash | v1.1.1 | — | Mar 25, 2025 | — |
| megahit | 1.1.1 | — | Mar 25, 2025 | — |
| mmseqs2 | 2.0.1 | ultra fast and sensitive protein searching and clustering suite | Mar 25, 2025 | GPL3 |
| normality | 0.4.2 | Micro-library to normalize text strings | Mar 25, 2025 | MIT License |
| parasail | alpha | — | Mar 25, 2025 | — |
| pplacer | 1.1.alpha | — | Mar 25, 2025 | — |
| prokka | 1.12.partialgenes | A tool for the rapid annotation of prokaryotic genomes | Mar 25, 2025 | GPLv2 |
| schedule | 0.4.3 | Job scheduling for humans. | Mar 25, 2025 | MIT License |
| spades | 3.10.1 | an assembly toolkit containing various assembly pipelines. | Mar 25, 2025 | GPL2 |
| ssu-align | 0.1.1 | structural alignemnt of ssu rRNA sequences | Mar 25, 2025 | BSD |
| syrah | 0.3 | Output trusted regions from raw sequencing data. | Mar 25, 2025 | BSD |
| vsearch | 2.4.3 | Versatile open-source tool for metagenomics | Mar 25, 2025 | GPL3 |